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Programme > Calendrier

Semaine Mar. 06 Mer. 07 Jeu. 08 Ven. 09 Liste

mardi 6 juillet 2021

Heures	événement	(+)
09:00 - 10:00	Test de connexion Salle 1 (Room 1 - https://us02web.zoom.us/s/85935915598)
10:00 - 11:00	Ouverture Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
11:00 - 11:55	Keynote: Sarah Teichman Chaiwoman: Emmanuelle Becker Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - TBAMultiMAP: Dimensionality Reduction of Multiple Datasets by Manifold Approximation and Projection
12:00 - 12:15	Plan France Médecine Génomique Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
12:15 - 13:30	Déjeuner Gather town (Gather Town)
13:30 - 14:00	GDR BIM Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
14:00 - 15:20	Bioinformatique structurale I (Room 1 - https://us02web.zoom.us/s/85935915598) - Christine Gaspin Room 1	(+)
14:00 - 14:20	› Flexible protein structural alignment for non trivial comparisons - Jean-Christophe Gelly
14:20 - 14:40	› MEDUSA: deep learning based protein flexibility prediction - Tatiana Galochkina
14:40 - 15:00	› A Graph-based Similarity Approach to Classify Recurrent Complex Motifs from their Context in RNA Structures - Coline Gianfrotta
15:00 - 15:20	› Feature extraction for the clustering of small 3D structures: application to RNA fragments - Alix Delannoy
14:00 - 15:20	Statistiques, machine learning & intelligence artificielle I (Room 2 - https://us02web.zoom.us/s/87021240668) - Laura Cantini Room 2	(+)
14:00 - 14:20	› Spliceator: A new strategy for genome annotation using deep learning algorithm - Nicolas Scalzitti
14:20 - 14:40	› MISTIC: A prediction tool to reveal disease- relevant deleterious missense variants - Thomas Weber
14:40 - 15:00	› Discovery of widespread transcription initiation at microsatellites predictable by sequence- based deep neural network - Mathys Grapotte
15:00 - 15:20	› Processing of Proton Transfer Reaction Time- of Flight Mass Spectrometry (PTR-TOF-MS) data for untargeted biomarker discovery in exhaled breath: application to COVID-19 intubated ventilated patient - Camille Roquencourt
14:00 - 15:20	Genomique fonctionnelle (Room 3 - https://us02web.zoom.us/j/82493854546) - Nicolas Thierry-Mieg Room 3	(+)
14:00 - 14:20	› Dissection of intercellular communication using the transcriptome-based framework ICELLNET - Lucile Massenet-Regad
14:20 - 14:40	› Topoisomerase I prevents transcription- replication conflicts at transcription termination sites - Yaqun Liu
14:40 - 15:00	› Automated Quality Control of NGS Data using Machine Learning - Jean-Fred Fontaine
15:00 - 15:20	› PenDA, a rank-based method for personalized differential analysis: application to lung cancer - Clémentine Decamps
15:20 - 15:30	Pause café Gather town (Gather Town)
15:30 - 17:00	Session posters 1 (nombres pairs) gather town - Session posters 1 (nombres pairs) gather town
17:00 - 17:30	IFB Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )

mercredi 7 juillet 2021

Heures	événement	(+)
09:00 - 09:55	Keynote : Jean-Philippe Vert Chairman: Mahendra Mariadassou Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - Deep learning for biological sequences
10:00 - 10:40	Base de données & visualisation de données (Room 1 - https://us02web.zoom.us/s/85935915598) - Sophie Schbath Room 1	(+)
10:00 - 10:20	› CALR-ETdb, the database of calreticulin variants diversity in essential thrombocythemia - Alexandre de Brevern
10:20 - 10:40	› Genoscapist: online exploration of quantitative profiles along genomes via interactively customized graphical representations - Sandra Dérozier
10:00 - 10:40	Évolution & phylogenetique (Room 2 - https://us02web.zoom.us/s/87021240668) - Étienne Danchin Room 2	(+)
10:00 - 10:20	› AvP: a software package for automatic phylogenetic detection of candidate horizontal gene transfers. - Georgios Koutsovoulos
10:20 - 10:40	› ConDor: Site-wise convergence detector in large protein alignments - Morel Marie
10:00 - 10:40	Biologie computationnelle des systèmes (Room 3 - https://us02web.zoom.us/j/82493854546) - Elisabeth Remy Room 3	(+)
10:00 - 10:20	› Automatic Synthesis of Boolean Networks from Biological Knowledge and Data - Athénaïs Vaginay
10:20 - 10:40	› Distinguishing Context Dependent Events in Quotients of Causal Stories - Sebastien Legare
10:40 - 11:00	Pause café Gather town (Gather Town)
11:00 - 12:30	Session posters 2 (nombres impairs) Gather town - Session posters 2 (nombres impairs) Gather town
12:30 - 14:00	Déjeuner Gather town (Gather Town)
14:00 - 14:55	Keynote: Julie Reveillaud Chairwoman: Claudine Médigue Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - Wolbachia population genomes from individual Culex pipiens ovaries reveal a plasmid-like extrachromosomal circular element
15:00 - 15:15	Sponsor - Illumina Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
15:15 - 15:30	Pause café Gather town (Gather Town)
15:30 - 18:00	Symposium: Bioinformatics for microbiomes Salle 1 - Rob Fin : Translating microbiome research outputs into main stream services in MGnify Lisa Röttjers Development of computational approaches for the prediction and analysis of species interaction networks from metagenomics data Raffaele Siano Sedimentary ancient DNA revealed irreversible plankton shifts and toxic microalgae species invasion in relation to human impact in the Bay of Brest Pause Table Ronde
15:30 - 18:00	Symposium Post selection inference: valid double-dipping Salle 2 - Yuval Benjamini Selective inference for region detection with high- throughput genomic assays Mitra Ebrahimpoor Inflated False Discovery Rate due to Volcano Plots: Problem and Solutions Pause Antoine Villié Post-Selection Inference for Sequence Motifs Lucy Gao Valid DifferentialAnalysis for Groups Defined via Clustering

jeudi 8 juillet 2021

Heures	événement	(+)
09:00 - 09:55	Keynote : Thomas Schiex Chairwoman: Gwenaelle André-Leroux Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - Computer-aided protein design
10:00 - 11:00	Algorithmes & structure de données de séquence I (Room 1 - https://us02web.zoom.us/s/85935915598) - Raluca Uricaru Room 1	(+)
10:00 - 10:20	› UMI-Gen: a UMI-based read simulator for variant calling evaluation - Vincent Sater
10:20 - 10:40	› QUARTIC: QUick pArallel algoRithms for high- Throughput sequencIng data proCessing - Frédéric Jarlier
10:40 - 11:00	› GraphUnzip: unzipping assembly graphs with long reads and Hi-C - Roland Faure
10:00 - 11:00	Meta-omiques & génomique microbienne (Room 2 - https://us02web.zoom.us/s/87021240668) - Damien Éveillard Room 2	(+)
10:00 - 10:20	› No microbe is an island: metabolic complementarity in the microbiota and identification of key players - Clémence Frioux
10:20 - 10:40	› Shallow Shotgun Metagenomics as a cost- effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis - Benoit Goutorbe
10:40 - 11:00	› panRGP: a pangenome-based method to predict genomic islands and explore their diversity - Adelme Bazin
10:00 - 11:00	Services et activités de plateforme (Room 3 - https://us02web.zoom.us/j/82493854546) - Erwan Corre Room 3	(+)
10:00 - 10:20	› Best practices of software development with Nextflow to support daily production in oncology - Fabrice Allain
10:20 - 10:40	› ToulligQC 2: fast and comprehensive quality controlfor Oxford Nanoporesequencing data - Laurent Jourdren
10:40 - 10:50	› Galaxy Genome Annotation (GGA) environment in the cloud - Romain Dallet
10:50 - 11:00	› A digital space for EMERGEN, the French plan for SARS-CoV-2 genomic surveillance and research - Jacques van Helden
11:00 - 11:15	Pause café Gather town (Gather Town)
11:15 - 11:30	Association des Jeunes Bioinformaticiens de France (JeBiF) Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
11:30 - 12:30	Assemblée Générale de la Société Française de Bioinformatique (SFBI) Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
12:30 - 14:00	Déjeuner Gather town (Gather Town)
14:00 - 14:55	Keynote : Carole Goble Chairwoman: Sarah Cohen-Boulaka Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - FAIR Computational Workflows
15:00 - 15:15	Sponsor - Genopole d’Evry Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
15:15 - 15:30	Pause café Gather town (Gather Town)
15:30 - 18:00	Symposium: Open Science and Interoperability in Bioinformatics Salle 1 - https://us02web.zoom.us/s/85935915598 - Sarah Cohen-Boulakia Introduction aux concepts de la Science Ouverte et de l'Interopérabilité appliqués à la Bioinformatique Frank Michel Annoter les pages web liées à la biodiversité avec des informations structurées pour les rendre plus découvrables et réutilisables Philippe Rocca-Serra Operating Fair principles: the FAIR cookbook project Cyril Pommier Standards d'échanges et concepts FAIR pour la Communauté Plantes Laura Furlong The DisGeNET knowledge platform: facilitating the access and use of disease genomics data Oliver Collin & Konogan Bouhry maDMP: vers un écosystème intégré pour la gestion des données de la Recherche Pause Flash presentations: T.Rosnet, J. Seiler, P.Poulain, H. Chiapello Table ronde
15:30 - 18:00	Where are we in the search for DNA motifs involved in transcriptional regulation? Salle 2 - https://us02web.zoom.us/s/87021240668 - François Parcy Confronting in vitro genomics to real life data reveals properties of floral transcription factors Morgane Thomas-Chollier Motif discovery in epigenomics datasets with RSAT peak-motifs2 Anthony Mathelier Combining TF binding profiles with ChIP-seq data to predict high quality direct TF-DNA interaction Pause Laurent Brehelin Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes Julien Rozière Genome-wide de novo detection of preferentially located motifs in 5’- and 3’-proximal regions from Arabidopsis and maize
15:30 - 18:00	Symposium: Integrative structural modeling in the era of big data and artificial intelligence Salle 3 - https://us02web.zoom.us/s/82493854546 - Introduction: Current challenges in 3D modeling of proteins and complexes Riccardo Pellarin Bayesian modeling in integrative structural biology Ezgi Karaca Dynamic Integrative Modeling of Molecular Machines Pause Sergei Grudinin Entering the post-protein structure prediction era Slavica Jonic Cryo-EM studies of continuous conformational variability of biomolecules in vitro and in situ based on image analysis, simulation and deep learning

vendredi 9 juillet 2021

Heures	événement	(+)
09:00 - 09:55	Keynote : Roderic Guigó Serra Chairman: Charles Lecellier Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - The epigenetic logic of gene activation
10:00 - 10:15	Sponsor - France Génomique Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )
10:15 - 10:30	Pause café Gather town (Gather Town)
10:30 - 11:50	Bioinformatique structurale II (Room 1 - https://us02web.zoom.us/s/85935915598) - Benjamin Bardiaux Room 1	(+)
10:30 - 10:50	› SLiMAN - a webserver to analyze protein- protein interaction mediated by short linear motifs - Victoria Reys
10:50 - 11:10	› Discovery of macrocyclic inhibitors of ALK using Frags2Drugs, a fragment-based drug design in silico tool - Gautier Peyrat
11:10 - 11:30	› Structural analysis of interaction between SARS-CoV-2 spike protein and the human ACE2 receptor - Sarah Nacéri
11:30 - 11:50	› Cyclodipeptide synthases of the NYH subfamily recognize tRNA using an α-helix enriched with positive residues - Anastasia Croitoru
10:30 - 11:50	Statistiques, machine learning & intelligence artificielle II (Room 2 - https://us02web.zoom.us/s/87021240668) - Nicolas Vergne Room 2	(+)
10:30 - 10:50	› IIDEA: Interactive Inference for Differential Expression Analyses - Nicolas Enjalbert Courrech
10:50 - 11:10	› Benchmarking joint multi-omics dimensionalityreduction approaches for the study of cancer - Laura Cantini
11:10 - 11:30	› The SgenoLasso and its cousins for selective genotyping and extreme sampling - Charles-Elie Rabier
11:30 - 11:50	› A systematic analysis of the genomic features involved in cellular specificities of transcription factor binding - Raphaël Romero
10:30 - 11:50	Algorithmes & structure de données de séquence II (Room 3 - https://us02web.zoom.us/j/82493854546) - Rayan Chiki Room 3	(+)
10:30 - 10:50	› MTG-Link: filling gaps in draft genome assemblies with linked read data - Anne Guichard
10:50 - 11:10	› LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data - Pierre Morisse
11:10 - 11:30	› Freddie: annotation-independent detection and Ddscovery of transcriptomic alternative splicing isoforms using long-read sequencing - Cedric Chauve
11:50 - 12:30	Présentation JOBIM 2022 Prix SFBI Clôture de JOBIM 2021 Salle principale (Main room - https://us02web.zoom.us/s/85223524848 )

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