Programme > Posters

 

Cette année le jury pour identifier les deux meilleurs posters de JOBIM2021, est constitué des participants à JOBIM ayant un compte sur le site de la SFBI. La SFBI et les candidats comptent sur vous ! Pour cela rendez-vous sur la page dédiée au vote après vous être identifié. Les posters participants au prix SFBI sont identifiés dans la liste ci-dessous.

www.sfbi.fr/jobim/2021/concours/poster 

 

Auteur·rice Titre Categorie ID Poster SFBI award Demo
Benoît Aliaga Exploring the transcriptional landscape of gonadotroph tumor microenvironment with single cell RNA-seq Recherche 92    
Omran Allatif Differential analysis with a single sample in the disease group Recherche 96    
Zachary ALLOUCHE A Comparison of MGI and Illumina Sequencing Technologies Plateforme et activités de service 124    
Jessica Andreani Structural prediction of protein-protein interactions using evolutionary information Recherche 73   Demo
Macine Bachir ABDELOUAHAB Multimodal data analysis of small size data to understand the effects of low doses of ionizing radiation on atherosclerosis Recherche 76    
Mitra Barzine Integration of publicly available high-throughput transcriptomic and proteomic studies of human tissues Recherche 84    
Carole Belliardo Improving the quality of public metagenomic data to study soil microorganisms Recherche 41    
Chloé Bessiere Towards a novel framework for large scale RNAseq data analysis in human health Recherche 107    
Fatoumata Binta Barry EuphausiiDB : A Transcriptomic reference Database for Krill Species Recherche 39    
Eric Bonnet Resting and stimulated human PBMC single-cell RNA-seq data integration Recherche 2    
Augustin Boudry FILT3R: AN NGS-BASED ALGORITHM FOR ROBUST DETECTION AND QUANTIFICATION OF FLT3-ITD IN CLINICAL PRACTICE Recherche 16    
quentin bouvier LINE-1 evolution in Mammals Recherche 45    
Déborah Boyenval Logical and incremental formalization of cell cycle checkpoints Recherche 50   Demo
Mathilde Boyer Detection of horizontal gene transfers of non-metazoan origin in the whitefly Bemisia tabaci Recherche 30 SFBI award  
Loraine Brillet-Guéguen or Arthur Le Bars Automated Deployment of Genome Databases for Marine Algae Using Galaxy Genome Annotation (GGA) Plateforme et activités de service 120    
Camilo Broc Integrated multi-omics of human early breast milk constituents Recherche 60    
Apolline Bruley Exploring the order and disorder content of de novo evolved proteins using structural signatures Recherche 55 SFBI award  
Alexandra Calteau MicroScope: an Integrated Platform for the Annotation and Exploration of Microbial Gene Functions through Genomic, Pangenomic and Metabolic Comparative Analysis Plateforme et activités de service 115   Demo
Etienne Camenen Multi-modal omics data integration in Galaxy Recherche 104   Demo
Clémence Carcopino A FAIR toolkit for fast visualization of omics data and metadata Plateforme et activités de service 128   Demo
Marie Cariou Evolutionary history of SARS-CoV-2 interactome in bats and primates identifies key virus-host interfaces and conflicts Recherche 51    
Océane Cassan DIANE: Dashboard for the Inference and Analysis of Networks from Expression data Recherche 10 SFBI award  Demo
Céline Cattelin A method combining two complementary approaches to trace the evolution of alpha-solenoid protein repertoires in Archaeplastida. Recherche 97 SFBI award  
Clothilde Chenal & Corentin Marco Study of variation associated with transposable elements in natural Anopheles gambiae mosquitoes populations in Cameroon Recherche 64    
Benjamin Churcheward MAGNETO: a complete workflow for the recovery of genomes from metagenomes using complementary strategies Recherche 81    
Thomas Cokelaer of quality control and taxonomy Plateforme et activités de service 121    
Manon Connault Talkmine, a workflow for the prediction of the interactions between secretome and surfaceome in the dialogue between cellular types Recherche 12    
Jaime Corbiniano dos Santos Neto Phylogeny of Meloidogyne incognita populations associated with Malpighia emarginata in the northeastern region of Brazil Recherche 111    
Emma Corre JeBif - Association for the Young Bioinformaticians of France Réseaux et groupes de travail 139    
Alexis Coulomb Spatial omics network analysis with tysserand and mosna Recherche 85    
Ali Cuhadar Tools for building and analyzing plant pangenomes Recherche 27 SFBI award  
Violette Da Cunha Redefining the archaea Thermococcales order with the biogeographic repartition and comparative genomic analysis of 104 isolates. Recherche 24    
Martine Da Rocha BIG: BioInformatics and Genomics platform at Institut Sophia Agrobiotech Plateforme et activités de service 114    
Romain DALLET Galaxy Genome Annotation (GGA) environment in the cloud Plateforme et activités de service 126 SFBI award  
Nguyet Dang BioGraph: A Julia package to extract the longest representative path from a pangenome graph Recherche 103 SFBI award Demo
Luciana De Oliveira ADLIN Science, an end-to-end digital platform for multi-omics data integration Plateforme et activités de service 127    
Thomas Denecker Drawing interactive profiles of Percent Identical Positions with PIPprofileR – A Covid-19 use case Recherche 57   Demo
Olivier Dennler Poster : A phylogenetic approach for functional module characterisation of the ADAMTS / ADAMTS-like protein family Recherche 112    
Margot DEROUIN Network approaches and multi-omics integration applied to major depressive disorder. Recherche 53    
Dimitri Desvillechabrol LORA, a Sequana Pipeline for Bacterial Genome Assemblies Plateforme et activités de service 122    
Laura DIEZ I FERRER A user-friendly web application to visualise genomic variation effects at gene and protein level Recherche 69   Demo
Robin Droit Similarity estimation of PDX model multiOmic profiles with corresponding patient tumors Recherche 56    
Andreea Dréau Contig error correction and scaffolding based on linked-read sequencing data Recherche 71    
Léonard Dubois Mining novel biosynthetic gene clusters from metagenomics Recherche 95 SFBI award  
Clémence Dupont-Thibert Reconstruction of a genome-scale metabolic model to improve lipid production in Microchloropsis gaditana. Recherche 98 SFBI award  
Marion Dupouy ERA-BIO-IT: A bioinformatics platform for applied research in Plant Breeding Plateforme et activités de service 119    
Patrick Durand ORSON: a nextflow workflow for transcriptome and proteome annotation Recherche 17   Demo
Eloi Durant Panache and the Linearized Pangenomes: a Visualization Story Recherche 15   Demo
Matthew Dyer MethMotif 2022: An update of the transcription factor binding motifs database that integrates tissue-specific features and DNA methylation profiles Recherche 100    
Rüçhan Ekren Multimodal Single-cell Resolution Investigation of the Transcriptomic Program of Purified NK Cells in Multiple Myeloma Patients Recherche 21 SFBI award  
KON-SUN-TACK Fabien Genome-wide analysis of DNA methylation robustness to environmental perturbations Recherche 38 SFBI award   
Anna-Sophie Fiston-Lavier Accurate transposable element detection and allele frequency estimate using long-read sequencing data combining assembly and mapping-based approaches Recherche 110    
Anna-Sophie Fiston-Lavier Educational innovation: The BioInformatics Learning Lab project (BILL) Réseaux et groupes de travail 134    
Alexandre Flin Ectopy: a new Python tool for prognosis biomarker discovery in cancers from omics data Recherche 23    
Rose-Marie Fraboulet Decoding the RNA regulatory network to identify microRNA-sponge mechanisms involving circular RNA. Recherche 88    
Sébastien Fromentin Extensive benchmark of machine learning methods for quantitative microbiome data Recherche 99    
Alban GAIGNARD BiogenHack 2021: a hackathon for enhancing interoperability within biology and health community Réseaux et groupes de travail 135    
Mael Garnier Recruitment and functional analysis of the genus Zobellia in marine metagenomes Recherche 36    
Matthieu Genais Transcription Factor activity estimation sheds light on the role of TNF in response to immunotherapy in a mouse melanoma model Recherche 58    
Mariem Ghoula Exploring the conformational rearrangement of the human Insulin Degrading Enzyme through Molecular Dynamics Simulations Recherche 5    
Laetitia Gibart Greening R. Thomas’ Framework: a Divide and Conquer Approach Recherche 59 SFBI award  
Catalina Gonzalez Cosimu: Connectivity-based simulation of derivative fold-changes from reference fold-changes Recherche 14    
Simon Gosset SURFMAP : a software for mapping in two dimensions any feature of a protein surface Recherche 7    
Skander Hatira BiSePS : Bisulfite Sequencing Processing Software Recherche 32 SFBI award Demo
Lysiane Hauguel Biogenosis: a start-up specialized in the creation and development of innovative bioinformatic tools supporting scientific research Plateforme et activités de service 116   Demo
Tristan Hoellinger Towards a gold standard for enhancer-gene interactions Recherche 1 SFBI award  
Alexis Hucteau Investigating resistance to IDH inhibitors in acute myeloid leukemia Recherche 89    
Geert-Jan Huizing Optimal Transport improves cell-cell similarity inference in single-cell omics data Recherche 6 SFBI award  
Lada Isakova Solving conflicts when gene and genome evolution disagree in paleopolyploid plants Recherche 106 SFBI award  Demo
Diego Javier Zea Ases: Alternative Splicing Evolution Server Plateforme et activités de service 118   Demo
Florian Jeanneret An integrative multi-omics workflow Recherche 13 SFBI award Demo
SAOUD JOHANNA Identifying explicit and tacit knowledge in a life science knowledge base Recherche 91 SFBI award  
Laurent Jourdren The IBENS Genomics core facility Plateforme et activités de service 132    
Basile Jumentier Comparison of high-dimension mediation methods to estimate impact of environmental effects on phenotype via DNA methylation Recherche 105    
Romane Junker Characterization of the genomic diversity and gene content of a lactobacilli collection Recherche 37 SFBI award   
Camille Kergal Deep Learning model for canine gene expression predictions Recherche 49 SFBI award  
Etienne Kornobis Capturing SARS-CoV-2 Plateforme et activités de service 123    
Anna Kravchenko New strategy for optimizing knowledge-based docking parameters: application to ssRNA-protein docking Recherche 66 SFBI award  
Cyril Kurylo Improving genome annotations with RNA-seq data: the TAGADA pipeline to combine transcript reconstruction and expression assessment Recherche 68 SFBI award  
Justine LABORY Leveraging multi-omics integration through co-expression networks to improve the diagnostic power of mitochondrial diseases Recherche 72   Demo
Sean Laidlaw Small non-coding RNA profiling in Germ Cell Tumours Recherche 86    
Tanguy Lallemand How to explain QTL imbalance between ohnologous chromosomes? Recherche 52    
Claire Lansonneur Single-cell transcriptomics integrative approaches to define microglial heterogeneity during development Recherche 63    
Pierre Larmande AgroLD: A Knowledge Graph Database for plant functional genomics Recherche 43   Demo
Sophie Le Bars Integration of regulatory and metabolic networks Recherche 19 SFBI award  
Christophe Le Priol Rattus norvegicus reference genome selection for RNA-seq data analysis Recherche 79 SFBI award  
Pierre LECHAT SynTViewJS : a dynamical viewer for the microbial genome analysis Plateforme et activités de service 117   Demo
Maxime Lecomte Metabolic modelling deciphers interactions in a cheese bacterial community Recherche 94    
Maël Lefeuvre A comparative study of ancient DNA kinship estimation methods using pedigree simulations. Recherche 34    
Nathalie Lehmann Improving scRNA-seq analysis in poorly-annotated genomes with matching long-read transcriptome Recherche 20    
Arnaud Liehrmann Automatic differential analysis of transcription variants in the chloroplast with changepoint detection Recherche 82 SFBI award  
Matthias Lorthiois ANNEXA: Analysis of Nanopore transcriptomic data with Nextflow for Extended Annotation Recherche 44    
Valentin Loux Migale Bioinformatics Facilty Plateforme et activités de service 131    
Coulee Manon Development of integrative pipelines for transcriptional and epigenetic analyses: application to Dot1l and H3K79me2 during spermatogenesis Recherche 9    
Pauline MARIE Portability and option extensions for Phos2net, a tool for network reconstruction and pathway extraction based on phosphoproteomic data Recherche 35   Demo
Julien Martinelli Model learning to identify systemic regulators of the peripheral circadian clock Recherche 4 SFBI award  
Mélanie Masson Study of de novo gene birth in the genomes of plant-parasitic nematodes of the Meloidogyne genus Recherche 25 SFBI award  
Naoual Menssouri A prospective study of prostate cancer metastases identifiesan androgen receptor activity-low, stemness program associated with resistance to androgen receptor axis inhibitors andunveilsmechanisms of clonal evolution. Recherche 65    
Marie MILLE Search algorithms for dinucleotide Position Weight Matrices Recherche 101    
Laura Morel Visualization of FAANG data with VizFaDa Recherche 47 SFBI award Demo
Pierre Morisse LRez: C++ API and toolkit for analyzing and managing Linked-Reads data Recherche 8 SFBI award Demo
Amandine Paulay Flux Balance Analysis modeling of a gut bacteria with its proteolytic activity Recherche 62 SFBI award   
Alexis Pellerin Analysis of cell identity loss in cancer using artificial intelligence Recherche 42 SFBI award  
Florence Pittion DNA methylation repression of transcriptional activity and its reactivation in a demethylating context Recherche 31    
Pierre Poulain Reproducibility in bioinformatics: take care of your code with Software Heritage Plateforme et activités de service 133    
Anaïs Prud'homme Model selection in Phylogeny : Performances and limitations Recherche 48 SFBI award   
Raphaëlle Péguilhan Metagenomic and metatranscriptomic analysis for the study of clouds and aerosols Recherche 3 SFBI award  
Arthur Péré PADLE - Profiling Analysis of DifferentiaL Expression: a tool and environment designed to analyse complex RNA-seq gene expression data Recherche 77    
Fabien Quinquis Inferring genetic regulation of tumor microenvironment composition using mutliomic personalised analysis in cancer Recherche 102    
Vuong Quoc Hoang NGO A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes Recherche 70    
Anne-Elodie Receveur Comparison of two pipelines to study spatial transcriptomics Recherche 87    
Sidwell Rigade Meta-analysis of RNAseq runs performed on the IMRB genomics and bioinformatics platform: the dark side of QC Plateforme et activités de service 130    
Miriam Riquelme Pérez Multi-omics interactive tool set for differential expression, enrichment analysis and visualization Plateforme et activités de service 113 SFBI award Demo
johan Rollin Cont-ID: detection of cross-contamination in metagenomic data Recherche 28 SFBI award  
Sandra Romain SVJedi-graph: Structural Variant genotyping with long-reads using a variation graph Recherche 54 SFBI award  
Thomas Rosnet FAIR-Checker, a web tool to support the findability and reusability ofdigital life science resources Réseaux et groupes de travail 136 SFBI award Demo
Julien Roziere PLMdetect : de novo mapping of functional cis-regulatory motifs in 5’- and 3’-proximal regions from Arabidopsis and maize Recherche 18    
Jiri RUZICKA Accelerating the diagnosis: Automated prioritization of CNVs with ACMG/ClinGen standards Recherche 75    
Fanny S Krebs Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology Plateforme et activités de service 125    
Marine Salson Large structural variant detection on Pearl millet genome using Bionano optical mapping Recherche 29    
Anne-Carmen Sanchez Precise detection of antibiotic resistance genes in chicken microbiota Recherche 83 SFBI award  
Walter Santana Garcia RSAT peak-motifs2: motif discovery in genome-wide regulatory genomics datasets Recherche 26 SFBI award  
Mathilde Sautreuil Statistical method to detect PPR binding sites at Arabidopsis Thaliana Recherche 74 SFBI award  
Fatou Seck Thiam deCIPHER: A pipeline for amplicon-based nanopore sequencing for tracking SARS-CoV-2 variants Recherche 67 SFBI award   
Asma Sellami Predicting potential endocrine disrupting chemicals binding to Estrogen receptor α using a combination of structure based and ligand based in silico methods Recherche 11    
Raíssa Silva A workflow based on k-mers to select specific biomarker candidates in a tumor microenvironnement context Recherche 108    
Nicolas SOIRAT Automated identification of a cancer patient treatment: from sequencing to treatment prioritization Recherche 80    
Jacobo Solórzano Use of deconvolution for immuno-oncology: a methods review Recherche 93 SFBI award  
Haythem SRIHI Use of deep learning approaches for integrating multiple data types in the prediction of response to immunotherapy in melanoma Recherche 78    
Valentin Tilloy ASPICov: an Automated Pipeline for Identification of SARS-Cov2 nucleotidic Variants Réseaux et groupes de travail 137 SFBI award   
Claire Toffano-Nioche The IFB e-Learning Working Group Réseaux et groupes de travail 138    
Diego TOMASSI Modeling zero-inflated microbiome data: a sufficient dimension reduction approach Recherche 40    
Jérémy Tournayre Update of ProteINSIDE: an online tool for proteome data mining Recherche 22 SFBI award  Demo
Jacques VAN HELDEN A digital space for EMERGEN, the French plan for SARS-CoV-2 genomic surveillance and research Plateforme et activités de service 129    
Marion Varoqui TrEMOLODyn : How to monitor transposable element dynamics over generations ? Recherche 61 SFBI award  
Tiffany Yen Kway Data-Mining of GTEx Data for identification of potential regulators of Alternative Splicing Recherche 33    
Junhanlu Zhang JOBIM 2021 Pilot Project – Gender Speaking Differences in Academia Recherche 46 SFBI award   
Manel ZOGHLAMI Identification of LpxC enzyme as a novel drug target against a resistant strain of Acinetobacter baumannii by using subtractive genomic approach Recherche 90    
Michal Zulcinski RNA-Seq analysis of temporal artery biopsies to identify novel pathogenic pathways based on inflammatory infiltration patterns in Giant Cell Arteritis Recherche 109    
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