| Auteur·rice |
Titre |
Categorie |
ID Poster |
SFBI award |
Demo |
| Benoît Aliaga |
Exploring the transcriptional landscape of gonadotroph tumor microenvironment with single cell RNA-seq |
Recherche |
92 |
|
|
| Omran Allatif |
Differential analysis with a single sample in the disease group |
Recherche |
96 |
|
|
| Zachary ALLOUCHE |
A Comparison of MGI and Illumina Sequencing Technologies |
Plateforme et activités de service |
124 |
|
|
| Jessica Andreani |
Structural prediction of protein-protein interactions using evolutionary information |
Recherche |
73 |
|
Demo |
| Macine Bachir ABDELOUAHAB |
Multimodal data analysis of small size data to understand the effects of low doses of ionizing radiation on atherosclerosis |
Recherche |
76 |
|
|
| Mitra Barzine |
Integration of publicly available high-throughput transcriptomic and proteomic studies of human tissues |
Recherche |
84 |
|
|
| Carole Belliardo |
Improving the quality of public metagenomic data to study soil microorganisms |
Recherche |
41 |
|
|
| Chloé Bessiere |
Towards a novel framework for large scale RNAseq data analysis in human health |
Recherche |
107 |
|
|
| Fatoumata Binta Barry |
EuphausiiDB : A Transcriptomic reference Database for Krill Species |
Recherche |
39 |
|
|
| Eric Bonnet |
Resting and stimulated human PBMC single-cell RNA-seq data integration |
Recherche |
2 |
|
|
| Augustin Boudry |
FILT3R: AN NGS-BASED ALGORITHM FOR ROBUST DETECTION AND QUANTIFICATION OF FLT3-ITD IN CLINICAL PRACTICE |
Recherche |
16 |
|
|
| quentin bouvier |
LINE-1 evolution in Mammals |
Recherche |
45 |
|
|
| Déborah Boyenval |
Logical and incremental formalization of cell cycle checkpoints |
Recherche |
50 |
|
Demo |
| Mathilde Boyer |
Detection of horizontal gene transfers of non-metazoan origin in the whitefly Bemisia tabaci |
Recherche |
30 |
SFBI award |
|
| Loraine Brillet-Guéguen or Arthur Le Bars |
Automated Deployment of Genome Databases for Marine Algae Using Galaxy Genome Annotation (GGA) |
Plateforme et activités de service |
120 |
|
|
| Camilo Broc |
Integrated multi-omics of human early breast milk constituents |
Recherche |
60 |
|
|
| Apolline Bruley |
Exploring the order and disorder content of de novo evolved proteins using structural signatures |
Recherche |
55 |
SFBI award |
|
| Alexandra Calteau |
MicroScope: an Integrated Platform for the Annotation and Exploration of Microbial Gene Functions through Genomic, Pangenomic and Metabolic Comparative Analysis |
Plateforme et activités de service |
115 |
|
Demo |
| Etienne Camenen |
Multi-modal omics data integration in Galaxy |
Recherche |
104 |
|
Demo |
| Clémence Carcopino |
A FAIR toolkit for fast visualization of omics data and metadata |
Plateforme et activités de service |
128 |
|
Demo |
| Marie Cariou |
Evolutionary history of SARS-CoV-2 interactome in bats and primates identifies key virus-host interfaces and conflicts |
Recherche |
51 |
|
|
| Océane Cassan |
DIANE: Dashboard for the Inference and Analysis of Networks from Expression data |
Recherche |
10 |
SFBI award |
Demo |
| Céline Cattelin |
A method combining two complementary approaches to trace the evolution of alpha-solenoid protein repertoires in Archaeplastida. |
Recherche |
97 |
SFBI award |
|
| Clothilde Chenal & Corentin Marco |
Study of variation associated with transposable elements in natural Anopheles gambiae mosquitoes populations in Cameroon |
Recherche |
64 |
|
|
| Benjamin Churcheward |
MAGNETO: a complete workflow for the recovery of genomes from metagenomes using complementary strategies |
Recherche |
81 |
|
|
| Thomas Cokelaer |
of quality control and taxonomy |
Plateforme et activités de service |
121 |
|
|
| Manon Connault |
Talkmine, a workflow for the prediction of the interactions between secretome and surfaceome in the dialogue between cellular types |
Recherche |
12 |
|
|
| Jaime Corbiniano dos Santos Neto |
Phylogeny of Meloidogyne incognita populations associated with Malpighia emarginata in the northeastern region of Brazil |
Recherche |
111 |
|
|
| Emma Corre |
JeBif - Association for the Young Bioinformaticians of France |
Réseaux et groupes de travail |
139 |
|
|
| Alexis Coulomb |
Spatial omics network analysis with tysserand and mosna |
Recherche |
85 |
|
|
| Ali Cuhadar |
Tools for building and analyzing plant pangenomes |
Recherche |
27 |
SFBI award |
|
| Violette Da Cunha |
Redefining the archaea Thermococcales order with the biogeographic repartition and comparative genomic analysis of 104 isolates. |
Recherche |
24 |
|
|
| Martine Da Rocha |
BIG: BioInformatics and Genomics platform at Institut Sophia Agrobiotech |
Plateforme et activités de service |
114 |
|
|
| Romain DALLET |
Galaxy Genome Annotation (GGA) environment in the cloud |
Plateforme et activités de service |
126 |
SFBI award |
|
| Nguyet Dang |
BioGraph: A Julia package to extract the longest representative path from a pangenome graph |
Recherche |
103 |
SFBI award |
Demo |
| Luciana De Oliveira |
ADLIN Science, an end-to-end digital platform for multi-omics data integration |
Plateforme et activités de service |
127 |
|
|
| Thomas Denecker |
Drawing interactive profiles of Percent Identical Positions with PIPprofileR – A Covid-19 use case |
Recherche |
57 |
|
Demo |
| Olivier Dennler |
Poster : A phylogenetic approach for functional module characterisation of the ADAMTS / ADAMTS-like protein family |
Recherche |
112 |
|
|
| Margot DEROUIN |
Network approaches and multi-omics integration applied to major depressive disorder. |
Recherche |
53 |
|
|
| Dimitri Desvillechabrol |
LORA, a Sequana Pipeline for Bacterial Genome Assemblies |
Plateforme et activités de service |
122 |
|
|
| Laura DIEZ I FERRER |
A user-friendly web application to visualise genomic variation effects at gene and protein level |
Recherche |
69 |
|
Demo |
| Robin Droit |
Similarity estimation of PDX model multiOmic profiles with corresponding patient tumors |
Recherche |
56 |
|
|
| Andreea Dréau |
Contig error correction and scaffolding based on linked-read sequencing data |
Recherche |
71 |
|
|
| Léonard Dubois |
Mining novel biosynthetic gene clusters from metagenomics |
Recherche |
95 |
SFBI award |
|
| Clémence Dupont-Thibert |
Reconstruction of a genome-scale metabolic model to improve lipid production in Microchloropsis gaditana. |
Recherche |
98 |
SFBI award |
|
| Marion Dupouy |
ERA-BIO-IT: A bioinformatics platform for applied research in Plant Breeding |
Plateforme et activités de service |
119 |
|
|
| Patrick Durand |
ORSON: a nextflow workflow for transcriptome and proteome annotation |
Recherche |
17 |
|
Demo |
| Eloi Durant |
Panache and the Linearized Pangenomes: a Visualization Story |
Recherche |
15 |
|
Demo |
| Matthew Dyer |
MethMotif 2022: An update of the transcription factor binding motifs database that integrates tissue-specific features and DNA methylation profiles |
Recherche |
100 |
|
|
| Rüçhan Ekren |
Multimodal Single-cell Resolution Investigation of the Transcriptomic Program of Purified NK Cells in Multiple Myeloma Patients |
Recherche |
21 |
SFBI award |
|
| KON-SUN-TACK Fabien |
Genome-wide analysis of DNA methylation robustness to environmental perturbations |
Recherche |
38 |
SFBI award |
|
| Anna-Sophie Fiston-Lavier |
Accurate transposable element detection and allele frequency estimate using long-read sequencing data combining assembly and mapping-based approaches |
Recherche |
110 |
|
|
| Anna-Sophie Fiston-Lavier |
Educational innovation: The BioInformatics Learning Lab project (BILL) |
Réseaux et groupes de travail |
134 |
|
|
| Alexandre Flin |
Ectopy: a new Python tool for prognosis biomarker discovery in cancers from omics data |
Recherche |
23 |
|
|
| Rose-Marie Fraboulet |
Decoding the RNA regulatory network to identify microRNA-sponge mechanisms involving circular RNA. |
Recherche |
88 |
|
|
| Sébastien Fromentin |
Extensive benchmark of machine learning methods for quantitative microbiome data |
Recherche |
99 |
|
|
| Alban GAIGNARD |
BiogenHack 2021: a hackathon for enhancing interoperability within biology and health community |
Réseaux et groupes de travail |
135 |
|
|
| Mael Garnier |
Recruitment and functional analysis of the genus Zobellia in marine metagenomes |
Recherche |
36 |
|
|
| Matthieu Genais |
Transcription Factor activity estimation sheds light on the role of TNF in response to immunotherapy in a mouse melanoma model |
Recherche |
58 |
|
|
| Mariem Ghoula |
Exploring the conformational rearrangement of the human Insulin Degrading Enzyme through Molecular Dynamics Simulations |
Recherche |
5 |
|
|
| Laetitia Gibart |
Greening R. Thomas’ Framework: a Divide and Conquer Approach |
Recherche |
59 |
SFBI award |
|
| Catalina Gonzalez |
Cosimu: Connectivity-based simulation of derivative fold-changes from reference fold-changes |
Recherche |
14 |
|
|
| Simon Gosset |
SURFMAP : a software for mapping in two dimensions any feature of a protein surface |
Recherche |
7 |
|
|
| Skander Hatira |
BiSePS : Bisulfite Sequencing Processing Software |
Recherche |
32 |
SFBI award |
Demo |
| Lysiane Hauguel |
Biogenosis: a start-up specialized in the creation and development of innovative bioinformatic tools supporting scientific research |
Plateforme et activités de service |
116 |
|
Demo |
| Tristan Hoellinger |
Towards a gold standard for enhancer-gene interactions |
Recherche |
1 |
SFBI award |
|
| Alexis Hucteau |
Investigating resistance to IDH inhibitors in acute myeloid leukemia |
Recherche |
89 |
|
|
| Geert-Jan Huizing |
Optimal Transport improves cell-cell similarity inference in single-cell omics data |
Recherche |
6 |
SFBI award |
|
| Lada Isakova |
Solving conflicts when gene and genome evolution disagree in paleopolyploid plants |
Recherche |
106 |
SFBI award |
Demo |
| Diego Javier Zea |
Ases: Alternative Splicing Evolution Server |
Plateforme et activités de service |
118 |
|
Demo |
| Florian Jeanneret |
An integrative multi-omics workflow |
Recherche |
13 |
SFBI award |
Demo |
| SAOUD JOHANNA |
Identifying explicit and tacit knowledge in a life science knowledge base |
Recherche |
91 |
SFBI award |
|
| Laurent Jourdren |
The IBENS Genomics core facility |
Plateforme et activités de service |
132 |
|
|
| Basile Jumentier |
Comparison of high-dimension mediation methods to estimate impact of environmental effects on phenotype via DNA methylation |
Recherche |
105 |
|
|
| Romane Junker |
Characterization of the genomic diversity and gene content of a lactobacilli collection |
Recherche |
37 |
SFBI award |
|
| Camille Kergal |
Deep Learning model for canine gene expression predictions |
Recherche |
49 |
SFBI award |
|
| Etienne Kornobis |
Capturing SARS-CoV-2 |
Plateforme et activités de service |
123 |
|
|
| Anna Kravchenko |
New strategy for optimizing knowledge-based docking parameters: application to ssRNA-protein docking |
Recherche |
66 |
SFBI award |
|
| Cyril Kurylo |
Improving genome annotations with RNA-seq data: the TAGADA pipeline to combine transcript reconstruction and expression assessment |
Recherche |
68 |
SFBI award |
|
| Justine LABORY |
Leveraging multi-omics integration through co-expression networks to improve the diagnostic power of mitochondrial diseases |
Recherche |
72 |
|
Demo |
| Sean Laidlaw |
Small non-coding RNA profiling in Germ Cell Tumours |
Recherche |
86 |
|
|
| Tanguy Lallemand |
How to explain QTL imbalance between ohnologous chromosomes? |
Recherche |
52 |
|
|
| Claire Lansonneur |
Single-cell transcriptomics integrative approaches to define microglial heterogeneity during development |
Recherche |
63 |
|
|
| Pierre Larmande |
AgroLD: A Knowledge Graph Database for plant functional genomics |
Recherche |
43 |
|
Demo |
| Sophie Le Bars |
Integration of regulatory and metabolic networks |
Recherche |
19 |
SFBI award |
|
| Christophe Le Priol |
Rattus norvegicus reference genome selection for RNA-seq data analysis |
Recherche |
79 |
SFBI award |
|
| Pierre LECHAT |
SynTViewJS : a dynamical viewer for the microbial genome analysis |
Plateforme et activités de service |
117 |
|
Demo |
| Maxime Lecomte |
Metabolic modelling deciphers interactions in a cheese bacterial community |
Recherche |
94 |
|
|
| Maël Lefeuvre |
A comparative study of ancient DNA kinship estimation methods using pedigree simulations. |
Recherche |
34 |
|
|
| Nathalie Lehmann |
Improving scRNA-seq analysis in poorly-annotated genomes with matching long-read transcriptome |
Recherche |
20 |
|
|
| Arnaud Liehrmann |
Automatic differential analysis of transcription variants in the chloroplast with changepoint detection |
Recherche |
82 |
SFBI award |
|
| Matthias Lorthiois |
ANNEXA: Analysis of Nanopore transcriptomic data with Nextflow for Extended Annotation |
Recherche |
44 |
|
|
| Valentin Loux |
Migale Bioinformatics Facilty |
Plateforme et activités de service |
131 |
|
|
| Coulee Manon |
Development of integrative pipelines for transcriptional and epigenetic analyses: application to Dot1l and H3K79me2 during spermatogenesis |
Recherche |
9 |
|
|
| Pauline MARIE |
Portability and option extensions for Phos2net, a tool for network reconstruction and pathway extraction based on phosphoproteomic data |
Recherche |
35 |
|
Demo |
| Julien Martinelli |
Model learning to identify systemic regulators of the peripheral circadian clock |
Recherche |
4 |
SFBI award |
|
| Mélanie Masson |
Study of de novo gene birth in the genomes of plant-parasitic nematodes of the Meloidogyne genus |
Recherche |
25 |
SFBI award |
|
| Naoual Menssouri |
A prospective study of prostate cancer metastases identifiesan androgen receptor activity-low, stemness program associated with resistance to androgen receptor axis inhibitors andunveilsmechanisms of clonal evolution. |
Recherche |
65 |
|
|
| Marie MILLE |
Search algorithms for dinucleotide Position Weight Matrices |
Recherche |
101 |
|
|
| Laura Morel |
Visualization of FAANG data with VizFaDa |
Recherche |
47 |
SFBI award |
Demo |
| Pierre Morisse |
LRez: C++ API and toolkit for analyzing and managing Linked-Reads data |
Recherche |
8 |
SFBI award |
Demo |
| Amandine Paulay |
Flux Balance Analysis modeling of a gut bacteria with its proteolytic activity |
Recherche |
62 |
SFBI award |
|
| Alexis Pellerin |
Analysis of cell identity loss in cancer using artificial intelligence |
Recherche |
42 |
SFBI award |
|
| Florence Pittion |
DNA methylation repression of transcriptional activity and its reactivation in a demethylating context |
Recherche |
31 |
|
|
| Pierre Poulain |
Reproducibility in bioinformatics: take care of your code with Software Heritage |
Plateforme et activités de service |
133 |
|
|
| Anaïs Prud'homme |
Model selection in Phylogeny : Performances and limitations |
Recherche |
48 |
SFBI award |
|
| Raphaëlle Péguilhan |
Metagenomic and metatranscriptomic analysis for the study of clouds and aerosols |
Recherche |
3 |
SFBI award |
|
| Arthur Péré |
PADLE - Profiling Analysis of DifferentiaL Expression: a tool and environment designed to analyse complex RNA-seq gene expression data |
Recherche |
77 |
|
|
| Fabien Quinquis |
Inferring genetic regulation of tumor microenvironment composition using mutliomic personalised analysis in cancer |
Recherche |
102 |
|
|
| Vuong Quoc Hoang NGO |
A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes |
Recherche |
70 |
|
|
| Anne-Elodie Receveur |
Comparison of two pipelines to study spatial transcriptomics |
Recherche |
87 |
|
|
| Sidwell Rigade |
Meta-analysis of RNAseq runs performed on the IMRB genomics and bioinformatics platform: the dark side of QC |
Plateforme et activités de service |
130 |
|
|
| Miriam Riquelme Pérez |
Multi-omics interactive tool set for differential expression, enrichment analysis and visualization |
Plateforme et activités de service |
113 |
SFBI award |
Demo |
| johan Rollin |
Cont-ID: detection of cross-contamination in metagenomic data |
Recherche |
28 |
SFBI award |
|
| Sandra Romain |
SVJedi-graph: Structural Variant genotyping with long-reads using a variation graph |
Recherche |
54 |
SFBI award |
|
| Thomas Rosnet |
FAIR-Checker, a web tool to support the findability and reusability ofdigital life science resources |
Réseaux et groupes de travail |
136 |
SFBI award |
Demo |
| Julien Roziere |
PLMdetect : de novo mapping of functional cis-regulatory motifs in 5’- and 3’-proximal regions from Arabidopsis and maize |
Recherche |
18 |
|
|
| Jiri RUZICKA |
Accelerating the diagnosis: Automated prioritization of CNVs with ACMG/ClinGen standards |
Recherche |
75 |
|
|
| Fanny S Krebs |
Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology |
Plateforme et activités de service |
125 |
|
|
| Marine Salson |
Large structural variant detection on Pearl millet genome using Bionano optical mapping |
Recherche |
29 |
|
|
| Anne-Carmen Sanchez |
Precise detection of antibiotic resistance genes in chicken microbiota |
Recherche |
83 |
SFBI award |
|
| Walter Santana Garcia |
RSAT peak-motifs2: motif discovery in genome-wide regulatory genomics datasets |
Recherche |
26 |
SFBI award |
|
| Mathilde Sautreuil |
Statistical method to detect PPR binding sites at Arabidopsis Thaliana |
Recherche |
74 |
SFBI award |
|
| Fatou Seck Thiam |
deCIPHER: A pipeline for amplicon-based nanopore sequencing for tracking SARS-CoV-2 variants |
Recherche |
67 |
SFBI award |
|
| Asma Sellami |
Predicting potential endocrine disrupting chemicals binding to Estrogen receptor α using a combination of structure based and ligand based in silico methods |
Recherche |
11 |
|
|
| Raíssa Silva |
A workflow based on k-mers to select specific biomarker candidates in a tumor microenvironnement context |
Recherche |
108 |
|
|
| Nicolas SOIRAT |
Automated identification of a cancer patient treatment: from sequencing to treatment prioritization |
Recherche |
80 |
|
|
| Jacobo Solórzano |
Use of deconvolution for immuno-oncology: a methods review |
Recherche |
93 |
SFBI award |
|
| Haythem SRIHI |
Use of deep learning approaches for integrating multiple data types in the prediction of response to immunotherapy in melanoma |
Recherche |
78 |
|
|
| Valentin Tilloy |
ASPICov: an Automated Pipeline for Identification of SARS-Cov2 nucleotidic Variants |
Réseaux et groupes de travail |
137 |
SFBI award |
|
| Claire Toffano-Nioche |
The IFB e-Learning Working Group |
Réseaux et groupes de travail |
138 |
|
|
| Diego TOMASSI |
Modeling zero-inflated microbiome data: a sufficient dimension reduction approach |
Recherche |
40 |
|
|
| Jérémy Tournayre |
Update of ProteINSIDE: an online tool for proteome data mining |
Recherche |
22 |
SFBI award |
Demo |
| Jacques VAN HELDEN |
A digital space for EMERGEN, the French plan for SARS-CoV-2 genomic surveillance and research |
Plateforme et activités de service |
129 |
|
|
| Marion Varoqui |
TrEMOLODyn : How to monitor transposable element dynamics over generations ? |
Recherche |
61 |
SFBI award |
|
| Tiffany Yen Kway |
Data-Mining of GTEx Data for identification of potential regulators of Alternative Splicing |
Recherche |
33 |
|
|
| Junhanlu Zhang |
JOBIM 2021 Pilot Project – Gender Speaking Differences in Academia |
Recherche |
46 |
SFBI award |
|
| Manel ZOGHLAMI |
Identification of LpxC enzyme as a novel drug target against a resistant strain of Acinetobacter baumannii by using subtractive genomic approach |
Recherche |
90 |
|
|
| Michal Zulcinski |
RNA-Seq analysis of temporal artery biopsies to identify novel pathogenic pathways based on inflammatory infiltration patterns in Giant Cell Arteritis |
Recherche |
109 |
|
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