Journées Ouvertes en Biologie, Informatique et Mathématiques 2021

Keynote : Thomas Schiex
Chairwoman: Gwenaelle André-Leroux
Salle principale

Main room - https://us02web.zoom.us/s/85223524848

Computer-aided protein design

Algorithmes & structure de données de séquence I

Room 1 - https://us02web.zoom.us/s/85935915598

Raluca Uricaru
Room 1

› UMI-Gen: a UMI-based read simulator for variant calling evaluation - Vincent Sater 10:00-10:20 (20min)

› QUARTIC: QUick pArallel algoRithms for high- Throughput sequencIng data proCessing - Frédéric Jarlier 10:20-10:40 (20min)

› GraphUnzip: unzipping assembly graphs with long reads and Hi-C - Roland Faure 10:40-11:00 (20min)

Meta-omiques & génomique microbienne

Room 2 - https://us02web.zoom.us/s/87021240668

Damien Éveillard
Room 2

› No microbe is an island: metabolic complementarity in the microbiota and identification of key players - Clémence Frioux 10:00-10:20 (20min)

› Shallow Shotgun Metagenomics as a cost- effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis - Benoit Goutorbe 10:20-10:40 (20min)

› panRGP: a pangenome-based method to predict genomic islands and explore their diversity - Adelme Bazin 10:40-11:00 (20min)

Services et activités de plateforme

Room 3 - https://us02web.zoom.us/j/82493854546

Erwan Corre
Room 3

› Best practices of software development with Nextflow to support daily production in oncology - Fabrice Allain 10:00-10:20 (20min)

› ToulligQC 2: fast and comprehensive quality controlfor Oxford Nanoporesequencing data - Laurent Jourdren 10:20-10:40 (20min)

› Galaxy Genome Annotation (GGA) environment in the cloud - Romain Dallet 10:40-10:50 (10min)

› A digital space for EMERGEN, the French plan for SARS-CoV-2 genomic surveillance and research - Jacques van Helden 10:50-11:00 (10min)

Pause café
Gather town

Gather Town

Association des Jeunes Bioinformaticiens de France (JeBiF)
Salle principale

Main room - https://us02web.zoom.us/s/85223524848

Assemblée Générale de la Société Française de Bioinformatique (SFBI)
Salle principale

Main room - https://us02web.zoom.us/s/85223524848

Déjeuner
Gather town

Gather Town

Keynote : Carole Goble
Chairwoman: Sarah Cohen-Boulaka
Salle principale

Main room - https://us02web.zoom.us/s/85223524848

FAIR Computational Workflows

Sponsor - Genopole d’Evry
Salle principale

Main room - https://us02web.zoom.us/s/85223524848

Pause café
Gather town

Gather Town

Symposium: Open Science and Interoperability in Bioinformatics
Salle 1 - https://us02web.zoom.us/s/85935915598

Sarah Cohen-Boulakia Introduction aux concepts de la Science Ouverte et de l'Interopérabilité appliqués à la Bioinformatique
Frank Michel Annoter les pages web liées à la biodiversité avec des informations structurées pour les rendre plus découvrables et réutilisables
Philippe Rocca-Serra Operating Fair principles: the FAIR cookbook project
Cyril Pommier Standards d'échanges et concepts FAIR pour la Communauté Plantes
Laura Furlong The DisGeNET knowledge platform: facilitating the access and use of disease genomics data
Oliver Collin & Konogan Bouhry maDMP: vers un écosystème intégré pour la gestion des données de la Recherche
Pause
Flash presentations: T.Rosnet, J. Seiler, P.Poulain, H. Chiapello
Table ronde

Where are we in the search for DNA motifs involved in transcriptional regulation?
Salle 2 - https://us02web.zoom.us/s/87021240668

François Parcy Confronting in vitro genomics to real life data reveals properties of floral transcription factors
Morgane Thomas-Chollier Motif discovery in epigenomics datasets with RSAT peak-motifs2
Anthony Mathelier Combining TF binding profiles with ChIP-seq data to predict high quality direct TF-DNA interaction
Pause
Laurent Brehelin Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes
Julien Rozière Genome-wide de novo detection of preferentially located motifs in 5’- and 3’-proximal regions from Arabidopsis and maize

Symposium: Integrative structural modeling in the era of big data and artificial intelligence
Salle 3 - https://us02web.zoom.us/s/82493854546

Introduction: Current challenges in 3D modeling of proteins and complexes
Riccardo Pellarin Bayesian modeling in integrative structural biology
Ezgi Karaca Dynamic Integrative Modeling of Molecular Machines
Pause
Sergei Grudinin Entering the post-protein structure prediction era
Slavica Jonic Cryo-EM studies of continuous conformational variability of biomolecules in vitro and in situ based on image analysis, simulation and deep learning