Schedule > Planning
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Event |
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09:00 - 10:00
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Connection test
Room 1 (Room 1 - https://us02web.zoom.us/s/85935915598) |
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10:00 - 11:00
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Opening
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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11:00 - 11:55
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Keynote: Sarah Teichman
Chaiwoman: Emmanuelle Becker
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) - TBAMultiMAP: Dimensionality Reduction of Multiple Datasets by Manifold Approximation and Projection |
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12:00 - 12:15
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Plan France Médecine Génomique
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) |
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12:15 - 13:30
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Lunch
Gather town (Gather Town) |
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13:30 - 14:00
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GDR BIM
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) |
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14:00 - 15:20
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Structurale bioinformatics I (Room 1 - https://us02web.zoom.us/s/85935915598) - Christine Gaspin
Room 1 |
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14:00 - 14:20 |
› Flexible protein structural alignment for non trivial comparisons - Jean-Christophe Gelly |
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14:20 - 14:40 |
› MEDUSA: deep learning based protein flexibility prediction - Tatiana Galochkina |
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14:40 - 15:00 |
› A Graph-based Similarity Approach to Classify Recurrent Complex Motifs from their Context in RNA Structures - Coline Gianfrotta |
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15:00 - 15:20 |
› Feature extraction for the clustering of small 3D structures: application to RNA fragments - Alix Delannoy |
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14:00 - 15:20
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Statistics, machine learning & artificial intelligence I (Room 2 - https://us02web.zoom.us/s/87021240668) - Laura Cantini
Room 2 |
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14:00 - 14:20 |
› Spliceator: A new strategy for genome annotation using deep learning algorithm - Nicolas Scalzitti |
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14:20 - 14:40 |
› MISTIC: A prediction tool to reveal disease- relevant deleterious missense variants - Thomas Weber |
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14:40 - 15:00 |
› Discovery of widespread transcription initiation at microsatellites predictable by sequence- based deep neural network - Mathys Grapotte |
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15:00 - 15:20 |
› Processing of Proton Transfer Reaction Time- of Flight Mass Spectrometry (PTR-TOF-MS) data for untargeted biomarker discovery in exhaled breath: application to COVID-19 intubated ventilated patient - Camille Roquencourt |
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14:00 - 15:20
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Functional Genomics (Room 3 - https://us02web.zoom.us/j/82493854546) - Nicolas Thierry-Mieg
Room 3 |
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14:00 - 14:20 |
› Dissection of intercellular communication using the transcriptome-based framework ICELLNET - Lucile Massenet-Regad |
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14:20 - 14:40 |
› Topoisomerase I prevents transcription- replication conflicts at transcription termination sites - Yaqun Liu |
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14:40 - 15:00 |
› Automated Quality Control of NGS Data using Machine Learning - Jean-Fred Fontaine |
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15:00 - 15:20 |
› PenDA, a rank-based method for personalized differential analysis: application to lung cancer - Clémentine Decamps |
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15:20 - 15:30
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Coffee break
Gather town (Gather Town) |
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15:30 - 17:00
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Posters session 1 (even numbers)
gather town - Session posters 1 (nombres pairs) gather town |
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17:00 - 17:30
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IFB
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) |
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| Time |
Event |
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09:00 - 09:55
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Keynote : Jean-Philippe Vert
Chairman: Mahendra Mariadassou
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) - Deep learning for biological sequences |
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10:00 - 10:40
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Databases & data visualisation (Room 1 - https://us02web.zoom.us/s/85935915598) - Sophie Schbath
Room 1 |
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10:00 - 10:20 |
› CALR-ETdb, the database of calreticulin variants diversity in essential thrombocythemia - Alexandre de Brevern |
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10:20 - 10:40 |
› Genoscapist: online exploration of quantitative profiles along genomes via interactively customized graphical representations - Sandra Dérozier |
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10:00 - 10:40
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Evolution & phylogenetics (Room 2 - https://us02web.zoom.us/s/87021240668) - Étienne Danchin
Room 2 |
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10:00 - 10:20 |
› AvP: a software package for automatic phylogenetic detection of candidate horizontal gene transfers. - Georgios Koutsovoulos |
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10:20 - 10:40 |
› ConDor: Site-wise convergence detector in large protein alignments - Morel Marie |
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10:00 - 10:40
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Computational Systems Biology (Room 3 - https://us02web.zoom.us/j/82493854546) - Elisabeth Remy
Room 3 |
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10:00 - 10:20 |
› Automatic Synthesis of Boolean Networks from Biological Knowledge and Data - Athénaïs Vaginay |
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10:20 - 10:40 |
› Distinguishing Context Dependent Events in Quotients of Causal Stories - Sebastien Legare |
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10:40 - 11:00
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Coffee break
Gather town (Gather Town) |
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11:00 - 12:30
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Posters session 2 (odd numbers)
Gather town - Posters session 2 (odd numbers)
Gather town |
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12:30 - 14:00
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Lunch
Gather town (Gather Town) |
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14:00 - 14:55
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Keynote: Julie Reveillaud
Chairwoman: Claudine Médigue
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) - Wolbachia population genomes from individual Culex pipiens ovaries reveal a plasmid-like extrachromosomal circular element |
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15:00 - 15:15
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Sponsor - Illumina
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) |
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15:15 - 15:30
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Coffee break
Gather town (Gather Town) |
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15:30 - 18:00
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Symposium: Bioinformatics for microbiomes
Room 1 -
- Rob Fin : Translating microbiome research outputs into main stream services in MGnify
- Karoline Faust Development of computational approaches for the prediction and analysis of species interaction networks from metagenomics data
- Lucie Zinger TBA
- Présentations flash de posters
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15:30 - 18:00
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Symposium Post selection inference: valid double-dipping
Room 2 -
- Yuval Benjamini Selective inference for region detection with high- throughput genomic assays
- Mitra Ebrahimpoor Inflated False Discovery Rate due to Volcano Plots: Problem and Solutions
- Pause
- Antoine Villié Post-Selection Inference for Sequence Motifs
- Lucy Gao Valid DifferentialAnalysis for Groups Defined via Clustering
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| Time |
Event |
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09:00 - 09:55
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Keynote : Thomas Schiex
Chairwoman: Gwenaelle André-Leroux
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - Computer-aided protein design |
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10:00 - 11:00
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Algorithms & sequence data structures I (Room 1 - https://us02web.zoom.us/s/85935915598) - Raluca Uricaru
Room 1 |
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10:00 - 10:20 |
› UMI-Gen: a UMI-based read simulator for variant calling evaluation - Vincent Sater |
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10:20 - 10:40 |
› QUARTIC: QUick pArallel algoRithms for high- Throughput sequencIng data proCessing - Frédéric Jarlier |
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10:40 - 11:00 |
› GraphUnzip: unzipping assembly graphs with long reads and Hi-C - Roland Faure |
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10:00 - 11:00
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Meta-omics & microbial genomics (Room 2 - https://us02web.zoom.us/s/87021240668) - Damien Éveillard
Room 2 |
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10:00 - 10:20 |
› No microbe is an island: metabolic complementarity in the microbiota and identification of key players - Clémence Frioux |
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10:20 - 10:40 |
› Shallow Shotgun Metagenomics as a cost- effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis - Benoit Goutorbe |
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10:40 - 11:00 |
› panRGP: a pangenome-based method to predict genomic islands and explore their diversity - Adelme Bazin |
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10:00 - 11:00
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Platfom services and activities (Room 3 - https://us02web.zoom.us/j/82493854546) - Erwan Corre
Room 3 |
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10:00 - 10:20 |
› Best practices of software development with Nextflow to support daily production in oncology - Fabrice Allain |
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10:20 - 10:40 |
› ToulligQC 2: fast and comprehensive quality controlfor Oxford Nanoporesequencing data - Laurent Jourdren |
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10:40 - 10:50 |
› Galaxy Genome Annotation (GGA) environment in the cloud - Romain Dallet |
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10:50 - 11:00 |
› A digital space for EMERGEN, the French plan for SARS-CoV-2 genomic surveillance and research - Jacques van Helden |
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11:00 - 11:15
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Coffee break
Gather town (Gather Town) |
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11:15 - 11:30
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Association des Jeunes Bioinformaticiens de France (JeBiF)
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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11:30 - 12:30
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Assemblée Générale de la Société Française de Bioinformatique (SFBI)
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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12:30 - 14:00
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Lunch
Gather town (Gather Town) |
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14:00 - 14:55
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Keynote : Carole Goble
Chairwoman: Sarah Cohen-Boulaka
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - FAIR Computational Workflows |
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15:00 - 15:15
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Sponsor - Genopole d’Evry
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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15:15 - 15:30
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Coffee break
Gather town (Gather Town) |
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15:30 - 18:00
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Symposium: Open Science and Interoperability in Bioinformatics
Room 1 - https://us02web.zoom.us/s/85935915598 -
- Sarah Cohen-Boulakia Introduction aux concepts de la Science Ouverte et de l'Interopérabilité appliqués à la Bioinformatique
- Frank Michel Annoter les pages web liées à la biodiversité avec des informations structurées pour les rendre plus découvrables et réutilisables
- Philippe Rocca-Serra Operating Fair principles: the FAIR cookbook project
- Cyril Pommier Standards d'échanges et concepts FAIR pour la Communauté Plantes
- Laura Furlong The DisGeNET knowledge platform: facilitating the access and use of disease genomics data
- Oliver Collin & Konogan Bouhry maDMP: vers un écosystème intégré pour la gestion des données de la Recherche
- Pause
- Flash presentations: T.Rosnet, J. Seiler, P.Poulain, H. Chiapello
- Table ronde
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15:30 - 18:00
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Where are we in the search for DNA motifs involved in transcriptional regulation?
Room 2 - https://us02web.zoom.us/s/87021240668 -
- François Parcy Confronting in vitro genomics to real life data reveals properties of floral transcription factors
- Morgane Thomas-Chollier Motif discovery in epigenomics datasets with RSAT peak-motifs2
- Anthony Mathelier Combining TF binding profiles with ChIP-seq data to predict high quality direct TF-DNA interaction
- Pause
- Laurent Brehelin Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes
- Julien Rozière Genome-wide de novo detection of preferentially located motifs in 5’- and 3’-proximal regions from Arabidopsis and maize
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15:30 - 18:00
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Symposium: Integrative structural modeling in the era of big data and artificial intelligence
Room 3 - https://us02web.zoom.us/s/82493854546 -
- Introduction: Current challenges in 3D modeling of proteins and complexes
- Riccardo Pellarin Bayesian modeling in integrative structural biology
- Ezgi Karaca Dynamic Integrative Modeling of Molecular Machines
- Pause
- Sergei Grudinin Entering the post-protein structure prediction era
- Slavica Jonic Cryo-EM studies of continuous conformational variability of biomolecules in vitro and in situ based on image analysis, simulation and deep learning
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| Time |
Event |
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09:00 - 09:55
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Keynote : Roderic Guigó Serra
Chairman: Charles Lecellier
Salle principale (Main room - https://us02web.zoom.us/s/85223524848 ) - The epigenetic logic of gene activation |
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10:00 - 10:15
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Sponsor - France Génomique
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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10:15 - 10:30
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Coffee break
Gather town (Gather Town) |
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10:30 - 11:50
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Structural Bioinformatics II (Room 1 - https://us02web.zoom.us/s/85935915598) - Benjamin Bardiaux
Room 1 |
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10:30 - 10:50 |
› SLiMAN - a webserver to analyze protein- protein interaction mediated by short linear motifs - Victoria Reys |
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10:50 - 11:10 |
› Discovery of macrocyclic inhibitors of ALK using Frags2Drugs, a fragment-based drug design in silico tool - Gautier Peyrat |
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11:10 - 11:30 |
› Structural analysis of interaction between SARS-CoV-2 spike protein and the human ACE2 receptor - Sarah Nacéri |
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11:30 - 11:50 |
› Cyclodipeptide synthases of the NYH subfamily recognize tRNA using an α-helix enriched with positive residues - Anastasia Croitoru |
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10:30 - 11:50
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Statistics, machine learning & artificial intelligence II (Room 2 - https://us02web.zoom.us/s/87021240668) - Nicolas Vergne
Room 2 |
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10:30 - 10:50 |
› IIDEA: Interactive Inference for Differential Expression Analyses - Nicolas Enjalbert Courrech |
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10:50 - 11:10 |
› Benchmarking joint multi-omics dimensionalityreduction approaches for the study of cancer - Laura Cantini |
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11:10 - 11:30 |
› The SgenoLasso and its cousins for selective genotyping and extreme sampling - Charles-Elie Rabier |
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11:30 - 11:50 |
› A systematic analysis of the genomic features involved in cellular specificities of transcription factor binding - Raphaël Romero |
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10:30 - 11:50
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Algorithms & sequence data structures II (Room 3 - https://us02web.zoom.us/j/82493854546) - Rayan Chiki
Room 3 |
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10:30 - 10:50 |
› MTG-Link: filling gaps in draft genome assemblies with linked read data - Anne Guichard |
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10:50 - 11:10 |
› LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data - Pierre Morisse |
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11:10 - 11:30 |
› Freddie: annotation-independent detection and Ddscovery of transcriptomic alternative splicing isoforms using long-read sequencing - Cedric Chauve |
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11:50 - 12:30
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Presentation JOBIM 2022
SFBI rewards
JOBIM 2021 closure
Main room (Main room - https://us02web.zoom.us/s/85223524848 ) |
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